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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72299225_72300626_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72299225 - 72300626
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTATTTTATCT
Flanking Amino Acid:
AQRSKDPSSQVGACIVNSEN
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.67
0.9
74.5
40.2
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
58.8
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
DCTD
Ensembl Gene ID:
ENSAPLG00000002602
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002640
72285562 - 72304472
18911