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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72300739_72304278_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
72300739 - 72304278
Intron Length:
3540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
CCATAAAATGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTCCCCATAAAA
Flanking Amino Acid:
MSAQRPGHVNGFGNEASCRK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.9
46
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
55.8
0.13
1
48.8
38
Minor 5ss
33.8
-1.8
3.6
41.8
45.1
Minor BPS
58.8
0.27
1.8
71.53
39.9

Associated Gene:

Gene:
DCTD
Ensembl Gene ID:
ENSAPLG00000002602
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002640
72285562 - 72304472
18911