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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7231350_7233194_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7231350 - 7233194
Intron Length:
1845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTCTAATCT
Flanking Amino Acid:
GNLLVLYAFYSNKKLRTPQN
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72
0.49
1.1
75.3
38.1
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
58.6
0.35
1.9
80.05
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048099
7224347 - 7253134
28788
ENSAPLT00000024565
7223243 - 7253134
29892
ENSAPLT00000004483
7231216 - 7253134
21919