About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72333276_72333553_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
72333276 - 72333553

Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACA|GTAAGGAAT

5'SS Class:
major

3'SS Sequence:
CTGCATTTAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTGAC

U12 Branch Point Sequence:
CTGCATTTAACA

Flanking Amino Acid:
HIESCRQLRQQYPDWNPESR

Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.1
0.54
1.1
72.7
38.2

Major BPS
66.3
0.4
1.1
57
41.8

Major PPT
70.3
0.46
1
65.2
39.7

Minor 5ss
36.1
-1.6
3.3
54.2
43.9

Minor BPS
58.9
0.27
1.6
65.47
41

Associated Gene:

Gene:
ZNF638

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

72325928 - 72361973
36046

72325928 - 72363365
37438