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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7233329_7234693_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7233329 - 7234693
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTTCTC
5'SS Class:
major
3'SS Sequence:
TTTTGTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AGGAAAATAAAA
Flanking Amino Acid:
LHRGWILGDIGCDLYAFCGA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.2
41.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
83.8
0.76
0.9
81.3
36.4
Minor 5ss
37.8
-1.4
3.2
53.5
43.6
Minor BPS
38.5
-0.8
1.9
44.7
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048099
7224347 - 7253134
28788
ENSAPLT00000024565
7223243 - 7253134
29892
ENSAPLT00000004483
7231216 - 7253134
21919