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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72338091_72339085_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72338091 - 72339085
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTTTACTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
SGPRPSPYNRLLREELLNCG
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
38.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.9
0.81
0.7
81.6
29.9
Minor 5ss
42.5
-0.8
3
50.6
46.1
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
ZNF638
Ensembl Gene ID:
ENSAPLG00000019837
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024789
72325928 - 72361973
36046
ENSAPLT00000022648
72325928 - 72363365
37438