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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72344560_72344876_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72344560 - 72344876
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAATCTTTAAAC
Flanking Amino Acid:
VPQYKTIKDEESIFTAIIKE
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
66.8
0.51
1.3
68.53
36.1

Associated Gene:

Gene:
ZNF638
Ensembl Gene ID:
ENSAPLG00000019837
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024789
72325928 - 72361973
36046
ENSAPLT00000022648
72325928 - 72363365
37438