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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72347226_72348229_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72347226 - 72348229
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATTT
Flanking Amino Acid:
HYVVLKNKNKAILQLESPKA
Intron Amino Acid Position:
1154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
57
0.3
1.7
79.21
37.8

Associated Gene:

Gene:
ZNF638
Ensembl Gene ID:
ENSAPLG00000019837
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024789
72325928 - 72361973
36046
ENSAPLT00000022648
72325928 - 72363365
37438