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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7235485_7236953_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7235485 - 7236953
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
FMFLAIRSTGRDVQKLGSCS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
93.4
0.98
0.6
88.4
21.4
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048099
7224347 - 7253134
28788
ENSAPLT00000024565
7223243 - 7253134
29892
ENSAPLT00000004483
7231216 - 7253134
21919