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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72361520_72363029_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72361520 - 72363029
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTGTTTATCT
Flanking Amino Acid:
EDIIAISKSKGEAVKLPGSR
Intron Amino Acid Position:
2042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.8
0.76
0.8
77.5
36.5
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
52.3
0.15
2
71.96
45.3

Associated Gene:

Gene:
ZNF638
Ensembl Gene ID:
ENSAPLG00000019837
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022648
72325928 - 72363365
37438