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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7237110_7243078_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7237110 - 7243078
Intron Length:
5969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
YACVTLIAWAGKTIHNAVPC
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.4
39.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
87.9
0.85
0.7
85.9
28.3
Minor 5ss
31.6
-2.1
3.1
31.8
42.6
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004483
7231216 - 7253134
21919