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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7243254_7246668_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7243254 - 7246668
Intron Length:
3415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CATCTGTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AAATCCTTCACC
Flanking Amino Acid:
CVSSVSTGEATWSDVELDPV
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
60.5
0.24
1
59.6
40.5
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
65.3
0.47
1.7
71.23
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024565
7223243 - 7253134
29892
ENSAPLT00000004483
7231216 - 7253134
21919
ENSAPLT00000048099
7224347 - 7253134
28788