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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72490077_72496026_F

Intron Information:

Intron Rank:
133459
Intron Class:
major
Intron Phase:
Intron Coordinates:
72490077 - 72496026
Intron Length:
5950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TCTCACCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTCTCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72.9
0.52
0.8
66.6
29.4
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
55.3
0.15
1.8
71.76
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021792
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036148
72489988 - 72503484
13497
ENSAPLT00000038956
72489711 - 72503369
13659