About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72572243_72572339_F

Intron Information:

Intron Rank:
128470
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
72572243 - 72572339
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
GCTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AGAGCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
67.6
38.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
58.4
0.28
2.2
70.3
34.2
Minor BPS
49.8
-0
1.8
60.2
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031461
72570077 - 72573668
3592