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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72572348_72572469_F

Intron Information:

Intron Rank:
128471
Intron Class:
major
Intron Phase:
Intron Coordinates:
72572348 - 72572469
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACCTACA
5'SS Class:
major
3'SS Sequence:
ATCATCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.2
65.5
40.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.2
0.39
1
61.5
39.4
Minor 5ss
42.2
-0.9
2.8
51.8
39.1
Minor BPS
57.8
0.33
2
81.79
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031461
72570077 - 72573668
3592