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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7262065_7272246_R

Intron Information:

Intron Rank:
136064
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
7262065 - 7272246
Intron Length:
10182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGAGTC
5'SS Class:
major
3'SS Sequence:
CCTGGGTGCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCATGTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1
62.1
36.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.8
0.2
1.1
48.8
43.9
Minor 5ss
35.2
-1.7
3.4
41.4
45.4
Minor BPS
50.1
-0
2.1
68.94
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023807
7261160 - 7272451
11292