About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72719816_72720804_F

Intron Information:

Intron Rank:
132454
Intron Class:
major
Intron Phase:
Intron Coordinates:
72719816 - 72720804
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GGTGTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
72.3
38.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
42.1
-0.9
2.9
55.1
43.5
Minor BPS
52.2
0.15
1.7
68.52
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021177
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036413
72719470 - 72721884
2415