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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7282017_7283102_F

Intron Information:

Intron Rank:
150050
Intron Class:
major
Intron Phase:
Intron Coordinates:
7282017 - 7283102
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCTTCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
58.3
0.34
1.9
80.07
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045185
7273593 - 7283736
10144