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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7286826_7323299_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7286826 - 7323299
Intron Length:
36474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CATGGTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTTTCTCATTT
Flanking Amino Acid:
DFNMPLSISRLSDGGKAARA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.3
0.48
1
66.3
43.7
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
52
0.14
1.8
71.05
40.2

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037074
7286690 - 7409827
123138
ENSAPLT00000022490
7286690 - 7363952
77263
ENSAPLT00000004192
7286690 - 7410363
123674