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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72904556_72929961_F

Intron Information:

Intron Rank:
139517
Intron Class:
major
Intron Phase:
Intron Coordinates:
72904556 - 72929961
Intron Length:
25406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTCTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
79.2
0.66
0.8
76.9
30.3
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
68.4
0.57
1.2
71.66
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025014
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044132
72903467 - 72930696
27230