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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72911590_72911835_R

Intron Information:

Intron Rank:
153779
Intron Class:
major
Intron Phase:
Intron Coordinates:
72911590 - 72911835
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
TTGTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTTGTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
83.7
0.76
0.8
78.1
35.3
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
50.3
0.09
2.3
75.64
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030232
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029218
72911115 - 72912527
1413