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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73011423_73055242_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73011423 - 73055242
Intron Length:
43820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
CTTGTTTCGATT
Flanking Amino Acid:
LQLAFIDLRQACRELPGQLH
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
83
0.74
0.9
73.9
41.1
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
48.1
-0
1.6
65.52
40.4

Associated Gene:

Gene:
EXOC6B
Ensembl Gene ID:
ENSAPLG00000006898
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023222
73011102 - 73255099
243998