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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73041070_73055242_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73041070 - 73055242
Intron Length:
14173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTCTTTTATA
Flanking Amino Acid:
LQLAFIDLRQVKGFLEGQTE
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.7
0.76
0.8
82.2
34.4
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
65.9
0.49
1.6
74.49
37.5

Associated Gene:

Gene:
EXOC6B
Ensembl Gene ID:
ENSAPLG00000006898
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040536
73041013 - 73255099
214087