About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73101200_73125451_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73101200 - 73125451
Intron Length:
24252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
CCTAATTGAATT
Flanking Amino Acid:
YRCLHIYSVLGAQETFENYY
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
47.9
-0
1.7
62.05
42.4

Associated Gene:

Gene:
EXOC6B
Ensembl Gene ID:
ENSAPLG00000006898
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021147
73052704 - 73255099
202396
ENSAPLT00000038793
73041158 - 73255099
213942
ENSAPLT00000018162
73011541 - 73255099
243559
ENSAPLT00000035872
73054198 - 73255099
200902
ENSAPLT00000043688
72982320 - 73255099
272780
ENSAPLT00000007216
73018939 - 73255099
236161
ENSAPLT00000023222
73011102 - 73255099
243998
ENSAPLT00000043646
73004281 - 73255099
250819
ENSAPLT00000022815
73050010 - 73255099
205090
ENSAPLT00000040536
73041013 - 73255099
214087