About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73133250_73155854_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
73133250 - 73155854

Intron Length:
22605

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACTTTGC

5'SS Class:
major

3'SS Sequence:
GCTTTTTTTCTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTATCAT

U12 Branch Point Sequence:
AAAACTTGAAAT

Flanking Amino Acid:
FSLLLSPSIKAQQQRNLDNI

Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75
0.59
1.1
66.2
40.6

Major BPS
75.9
0.64
1.1
77.7
35.2

Major PPT
83.8
0.76
0.8
76.9
37.3

Minor 5ss
39.5
-1.2
3
53.6
43.4

Minor BPS
49.7
0.06
1.5
64.15
39.1

Associated Gene:

Gene:
EXOC6B

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

73054198 - 73255099
200902

73050010 - 73255099
205090

73052704 - 73255099
202396

72982320 - 73255099
272780

73041013 - 73255099
214087