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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73155927_73202549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73155927 - 73202549
Intron Length:
46623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTCCTTCATT
Flanking Amino Acid:
DKIGETAMKQDCRYNQWKII
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70.4
0.46
1
75.3
33.4
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
73.9
0.84
1.7
88.65
36.5

Associated Gene:

Gene:
EXOC6B
Ensembl Gene ID:
ENSAPLG00000006898
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022815
73050010 - 73255099
205090
ENSAPLT00000021147
73052704 - 73255099
202396
ENSAPLT00000043688
72982320 - 73255099
272780
ENSAPLT00000040536
73041013 - 73255099
214087
ENSAPLT00000035872
73054198 - 73255099
200902