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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7323452_7354175_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7323452 - 7354175
Intron Length:
30724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTACAATT
Flanking Amino Acid:
CTGNLNMTLQRVASVPKPDL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
50.8
0.1
1.8
73.39
37.8

Associated Gene:

Gene:
PDLIM5
Ensembl Gene ID:
ENSAPLG00000004068
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037074
7286690 - 7409827
123138
ENSAPLT00000022490
7286690 - 7363952
77263
ENSAPLT00000004192
7286690 - 7410363
123674