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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73297513_73304430_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73297513 - 73304430
Intron Length:
6918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CAGCTCTGACCT
Flanking Amino Acid:
TPCSQIRGAEDRDGPAGAGD
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85
0.79
0.8
80.9
31.1
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
46.4
-0.1
1.7
58.88
44.1

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039436
73297277 - 73379842
82566