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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73313200_73320709_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73313200 - 73320709
Intron Length:
7510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
GGTCCATGAAAT
Flanking Amino Acid:
LPPIIMSILEKTSLLRSRPR
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
48.4
-0
1.8
67.61
41.6

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039436
73297277 - 73379842
82566
ENSAPLT00000033740
73305319 - 73379842
74524
ENSAPLT00000005414
73297435 - 73379842
82408
ENSAPLT00000040429
73296435 - 73379842
83408