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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73320796_73322722_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73320796 - 73322722
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTTCCA
Flanking Amino Acid:
VGSSRIAAKHALLETALTRV
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
69.7
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
37
-1.5
3
45.5
35.6
Minor BPS
49.3
-0
3.6
83.52
37

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033740
73305319 - 73379842
74524
ENSAPLT00000005414
73297435 - 73379842
82408
ENSAPLT00000040429
73296435 - 73379842
83408
ENSAPLT00000039436
73297277 - 73379842
82566
ENSAPLT00000034914
73319378 - 73379842
60465