Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73322839_73326955_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73322839 - 73326955

Intron Length:

4117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTTCTCATCC

Flanking Amino Acid:

IQRFVPFPAVASANICNVVL

Intron Amino Acid Position:

288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.5

34.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

79.6

0.67

0.8

77.6

Minor 5ss

34.3

-1.8

44.8

42.9

Minor BPS

63.2

0.39

1.8

78.26

37.5

Associated Gene:

Gene:

SFXN5

Ensembl Gene ID:

ENSAPLG00000005231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034914

73319378 - 73379842

60465

ENSAPLT00000033740

73305319 - 73379842

74524

ENSAPLT00000005414

73297435 - 73379842

82408

ENSAPLT00000040429

73296435 - 73379842

83408

ENSAPLT00000039436

73297277 - 73379842

82566