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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73337146_73338406_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73337146 - 73338406
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCTC
5'SS Class:
major
3'SS Sequence:
GTTTCCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATCT
Flanking Amino Acid:
QTLASTVFWQWLNQSHNACV
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.8
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.8
78.3
30.6
Minor 5ss
40.9
-1
3.4
59.1
45.6
Minor BPS
62.6
0.47
1.8
81.83
39.5

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034914
73319378 - 73379842
60465
ENSAPLT00000033740
73305319 - 73379842
74524
ENSAPLT00000040429
73296435 - 73379842
83408
ENSAPLT00000039436
73297277 - 73379842
82566