Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73338461_73342990_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73338461 - 73342990

Intron Length:

4530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

CATTTACTAACA

Flanking Amino Acid:

SGYIPFGTPIVVGLLLPNQT

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.3

77.1

37.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

89.3

0.88

0.6

84.5

23.3

Minor 5ss

39.9

-1.1

2.8

53.6

37.3

Minor BPS

50.6

0.02

1.9

66.23

39.8

Associated Gene:

Gene:

SFXN5

Ensembl Gene ID:

ENSAPLG00000005231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034914

73319378 - 73379842

60465

ENSAPLT00000033740

73305319 - 73379842

74524

ENSAPLT00000005414

73297435 - 73379842

82408

ENSAPLT00000040429

73296435 - 73379842

83408

ENSAPLT00000039436

73297277 - 73379842

82566