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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73345619_73356923_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73345619 - 73356923
Intron Length:
11305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAATG
Flanking Amino Acid:
AACARNQGSQVCGPLKK*
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
65.7
45.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
43.1
-0.8
3
58.6
45.7
Minor BPS
62.8
0.27
1.6
66.82
41.6

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044168
73345597 - 73379842
34246