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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73345619_73363502_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73345619 - 73363502
Intron Length:
17884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAATG
Flanking Amino Acid:
TLPPGVTNKELWAAQKIKQA
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
62.8
0.27
1.6
66.82
41.6

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039436
73297277 - 73379842
82566
ENSAPLT00000034914
73319378 - 73379842
60465
ENSAPLT00000033740
73305319 - 73379842
74524
ENSAPLT00000005414
73297435 - 73379842
82408
ENSAPLT00000040429
73296435 - 73379842
83408