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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73363581_73372890_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73363581 - 73372890
Intron Length:
9310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCCGTTGCAACC
Flanking Amino Acid:
IDPRTLFVTESRLKEAVQLL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
79.7
0.67
0.9
73
37.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
41.2
-0.6
2.1
48.67
42.4

Associated Gene:

Gene:
SFXN5
Ensembl Gene ID:
ENSAPLG00000005231
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005414
73297435 - 73379842
82408
ENSAPLT00000039436
73297277 - 73379842
82566
ENSAPLT00000034914
73319378 - 73379842
60465
ENSAPLT00000033740
73305319 - 73379842
74524
ENSAPLT00000044168
73345597 - 73379842
34246
ENSAPLT00000030662
73356519 - 73379842
23324
ENSAPLT00000040429
73296435 - 73379842
83408