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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73385592_73385862_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73385592 - 73385862
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAA
U12 Branch Point Sequence:
CTCCCCTGAACC
Flanking Amino Acid:
AEARFISSAKGKGLFATRSI
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
57.2
0.18
1.1
48.9
36.6
Major PPT
82.1
0.72
0.7
76.9
25
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
63.6
0.41
1.5
68.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027296
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048484
73383494 - 73385952
2459