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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73394650_73394882_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73394650 - 73394882
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAACC
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTCTCCTTCACC
Flanking Amino Acid:
QKPSLEVSPQLPTWAACFNR
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.8
38.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
32.7
-2
3.2
43.9
43.5
Minor BPS
74.5
0.75
1.7
82.24
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022778
73393450 - 73410593
17144