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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73394650_73399909_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73394650 - 73399909
Intron Length:
5260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTCTCCTTCACC
Flanking Amino Acid:
KEPKESPQKPSSPPGPPAST
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
74.5
0.75
1.7
82.24
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041689
73392164 - 73410593
18430
ENSAPLT00000036923
73392164 - 73410593
18430
ENSAPLT00000044312
73392164 - 73410593
18430