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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73400622_73401756_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73400622 - 73401756
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CGCCCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TGTTTTTTCCCC
Flanking Amino Acid:
RHSSLSTERSVRDFLPSPRL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
65
0.34
0.8
57.5
27
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
41.6
-0.6
3.5
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041689
73392164 - 73410593
18430
ENSAPLT00000036923
73392164 - 73410593
18430
ENSAPLT00000022778
73393450 - 73410593
17144
ENSAPLT00000044312
73392164 - 73410593
18430