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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73402188_73410165_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73402188 - 73410165
Intron Length:
7978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTCTCCTCATCC
Flanking Amino Acid:
PAPPRASVELGWHKLHSKAG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74
0.54
0.8
65.5
35
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
55.2
0.14
1.9
66.27
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018305
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036923
73392164 - 73410593
18430
ENSAPLT00000022778
73393450 - 73410593
17144
ENSAPLT00000044312
73392164 - 73410593
18430
ENSAPLT00000041689
73392164 - 73410593
18430