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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73419275_73423247_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73419275 - 73423247
Intron Length:
3973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGGG
5'SS Class:
major
3'SS Sequence:
GTCTCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCGAG
U12 Branch Point Sequence:
GGGCACCGAGCT
Flanking Amino Acid:
ASTLHLTEEQVKVWFQNRRI
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
62.7
42.1
Major BPS
40
-0.6
1.5
33.5
34
Major PPT
74.2
0.55
0.8
65.5
36.1
Minor 5ss
29.9
-2.3
3.3
39
46.1
Minor BPS
37.8
-0.8
1.9
50.62
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021748
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017793
73418912 - 73423589
4678