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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73435938_73436239_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73435938 - 73436239
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TCTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
CTGTGCCCACCA
Flanking Amino Acid:
VTPKALLHFNSVCRNLKSIV
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.9
39.5
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
74.3
0.55
0.8
65.5
36.1
Minor 5ss
34.2
-1.8
2.9
48
41.7
Minor BPS
39.2
-0.8
2.3
51.75
46

Associated Gene:

Gene:
FBXO41
Ensembl Gene ID:
ENSAPLG00000014918
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015553
73434639 - 73446618
11980