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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73436399_73436584_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73436399 - 73436584
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGCTCCTGACCG
Flanking Amino Acid:
GCGVQGLASLARNCMRLQVL
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
49.1
-0.2
1.9
53.89
46.4

Associated Gene:

Gene:
FBXO41
Ensembl Gene ID:
ENSAPLG00000014918
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015553
73434639 - 73446618
11980