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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73436704_73437360_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73436704 - 73437360
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
TCTTTCTTTCTT
Flanking Amino Acid:
ISLQVAPLHPCQQPTRFSNR
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
43.5
-0.4
3.6
74.69
42.7

Associated Gene:

Gene:
FBXO41
Ensembl Gene ID:
ENSAPLG00000014918
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015553
73434639 - 73446618
11980