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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73440109_73440418_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73440109 - 73440418
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCACGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTTTCTCCACGT
Flanking Amino Acid:
IGRPVPARAQRERHPGPGPA
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.87
1
73.7
33.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
74.9
0.56
0.7
68.3
25.5
Minor 5ss
18.1
-3.7
4.1
29.8
43.2
Minor BPS
42.4
-0.5
2.2
65.41
45.1

Associated Gene:

Gene:
FBXO41
Ensembl Gene ID:
ENSAPLG00000014918
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015553
73434639 - 73446618
11980