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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73443526_73445834_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
73443526 - 73445834
Intron Length:
2309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTGTCACTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
55.3
0.14
2
69.56
41.2

Associated Gene:

Gene:
FBXO41
Ensembl Gene ID:
ENSAPLG00000014918
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015553
73434639 - 73446618
11980