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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73450060_73450357_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73450060 - 73450357
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCGTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ATCCCTCTAACA
Flanking Amino Acid:
QLLAEAEFLGGELLGAPVSG
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
68.1
0.41
0.9
58.3
38.5
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
57.5
0.23
1.7
67.95
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023116
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033554
73448103 - 73450496
2394