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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73472034_73481464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73472034 - 73481464
Intron Length:
9431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTGCTTTAAAA
Flanking Amino Acid:
DEDEEEQEVPPIATTPPHRC
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
65.8
0.49
1.5
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000037430
73471950 - 73536722
64773