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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_73481600_73483550_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73481600 - 73483550
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
CACTTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTCTTGATGC
Flanking Amino Acid:
AIRQRTAINQEIESWYQLPP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.8
0.47
0.9
68.7
36.9
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
52
0.04
2
70.84
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037162
73471950 - 73537868
65919
ENSAPLT00000036574
73471950 - 73532705
60756
ENSAPLT00000030028
73471950 - 73538777
66828
ENSAPLT00000037430
73471950 - 73536722
64773